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N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide: Commentary on a Cornerstone Reagent in Enzymology

Tracing the Historical Roots

The journey of N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide, often shortened to succinyl-AAPF-pNA in research circles, tells a story familiar to anyone who spends time in a life sciences lab. This substrate emerged out of the growing demand for reliable colorimetric assays in the mid-to-late 20th century. Scientists hunting for sharper, more specific tools to measure enzyme activity started with simple chromogenic peptides, then tacked on modifications for precision. Succinyl-AAPF-pNA developed as a response to the need for a substrate that helps examine the chymotrypsin-like activity in complex protease mixes. Researchers honed its sequence and nitroanilide tag for a real purpose: visible, quantifiable results without the guesswork. This kind of tinkering shows the value of ground-level persistence in biochemical method development.

Demystifying the Compound

Peering at a vial of this compound, the pale yellow powder may not look like much, but it does heavy lifting in the lab. Succinyl-AAPF-pNA deploys a tetrapeptide sequence capped by a p-nitroanilide group at one end and a succinyl group on the other. That pNA tag gives every colorimetric digest a practical punch. It’s simple yet elegant: enzymes like chymotrypsin snip the phenylalanine bond and release p-nitroaniline, which produces a yellow color easily picked up by a spectrophotometer at 405 nm. Anyone measuring serine protease activity knows how this clarity helps cut through the noise in enzyme kinetics work. Relying on a chromogenic endpoint lets even the sleepiest grad student pick up real differences in substrate turnover.

Physical and Chemical Character

This molecule keeps to itself until it meets the right protease. It dissolves well in organic solvents like DMSO, sparingly in water, which tailors the preparation to rigorous lab routines. Stability comes from both its peptide backbone and the succinyl group, which resists unwanted hydrolysis in the buffer. That predictability helps, since unpredictable substrates risk skewing the results and causing confusion when replicating experiments. People often forget physical properties aren’t just for the storage shelf; they decide whether a protocol gets headaches or clear data.

Looking at Technical Details and Labeling

Knowing what goes onto a label matters in a good lab. The CAS number tracks the compound across legal, supply, and research documents, ensuring one can order the same molecule twice. Accurate mass, purity, and storage directions keep experiments replicable, which researchers value more than marketing claims. Tacking the right molecular weight onto calculations saves time and eliminates confusion, especially for folks preparing precise solutions for kinetic runs. If the substrate has high purity and a reliable certificate of analysis, it helps avoid wild goose chases over unexplained absorbance readings or wonky blanks.

Preparation Method: The Synthesis Craft

Building N-Succinyl-Ala-Ala-Pro-Phe-pNA rests on proven solid-phase peptide synthesis. Technicians string together alanine, proline, and phenylalanine residues stepwise, capping one end with succinyl anhydride and attaching the p-nitroanilide group last. The process takes patience and strict process control. Peptide synthesis isn’t glamorous but skimping on steps contaminates the final product, showing up as ghost peaks and errant signals in kinetic assays. Using well-validated methods safeguards against batch-to-batch headaches and keeps cross-lab comparisons meaningful. People who treat synthesis like an afterthought end up wasting weeks fixing their mistakes.

Chemical Shifts and Tinkering

Since proteases vary in specificity, chemists modify the tetrapeptide sequence to probe different enzyme angles. Some swap proline or alter succinylation to shift selectivity. Modifying the peptide chain lets researchers tease out subtle protease differences, spotting mutations or new pathways. Titrating reaction conditions, like pH or the addition of metal ions, tailors the substrate’s performance, allowing sharp focus on a single slice of protease function. This experimentation isn’t just academic; it lets drug discovery teams screen inhibitors precisely, which ultimately impacts everything from basic enzyme mapping to prep work for gene therapy vectors.

Synonyms and Product Labels: A Tangled Web

Synonyms crop up as researchers hop between publications and vendors. The peptide can show up under names like N-Succinyl-alanyl-alanyl-prolyl-phenylalanyl-p-nitroanilide, or short-form versions using single-letter amino acid codes. Having a clear mapping between names and structures allows chemists to skip confusion, especially during literature reviews or procurement. Without this linguistic clarity, teams end up running parallel experiments on similar-but-not-quite-identical compounds, draining grant funds and slowing project timelines.

Daily Lab Safety and Protocol Integrity

Safety doesn’t always feel exciting but mishandling organic solvents or dust from dry peptide substrates will ruin anyone’s day. The nitroanilide group, in particular, poses a risk if inhaled or spilled. Protective equipment and proper waste disposal matter just as much as good technique. Hazards stem not from the peptide backbone but the pNA, which, if handled lazily, causes dermatitis or issues with chemical burns. Labs that opt for clear, hands-on training in peptide substrate handling rarely see accidents.

Applications: More Than Just Chromogenic Kinetics

This substrate finds a home not just in textbook enzyme assays but throughout preclinical research, clinical diagnostics, and even food quality control. Pharmaceutical companies rely on its specificity to validate protease inhibitor efficacy. Biotech startups use it as a robust tool for screening mutant proteases relevant in cancer or neurodegenerative research. Medical centers tap into its clarity in anticoagulant monitoring, helping guide patient care. Beyond medicine, food scientists deploy similar peptide substrates to track proteolytic spoilage in cheese or meat. Across the board, the quick colorimetric readout frees busy researchers from elaborate TLC or HPLC protocols, letting modestly-funded labs still contribute sharp, reproducible science.

From the Bench: Research and Innovation

The real excitement around this kind of substrate comes from its flexibility and openness to innovation. Each year brings small-batch tweaks in the peptide backbone or nitroanilide label, yielding new tools to answer evolving research needs. Academic teams harness these tweaks to build high-throughput screens for rare proteases, unlocking paths for new drug therapies. Chemical biologists often splice fluorophores or change leaving groups, which in turn sharpens detection limits in ultrafast, low-abundance enzyme studies. The focus stays the same: move away from laborious, opaque reactions and toward transparent, slice-of-life enzyme kinetics.

Toxicity and Health Concerns

Though many consider the peptide component benign, the p-nitroanilide tag carves out serious attention for toxicity. Nitroanilines linger in ecosystems, bioaccumulate in aquatic environments, and may impact human health through long-term, low-level exposures. Labs storing and handling these reagents responsibly keep exposure risks low, but disposal policies lag behind fast-moving research in some regions. Open conversations about safer alternatives, conscientious disposal, and routine risk assessments protect both research staff and their surroundings. Modern research practice doesn’t separate lab bench from ecosystem and encourages green chemistry approaches for legacy nitroanilide reagents.

Looking Ahead: Prospects and Hurdles

The future of succinyl-AAPF-pNA reflects a broader move in biochemical assay design: sharper specificity with less environmental baggage. Next-generation substrates could sidestep nitroanilide toxicity, dropping in biodegradable chromophores or moving to real-time fluorescent tools. With digital integration and machine learning entering lab workflows, these peptides may soon anchor remote, cloud-connected assays for rapid protease tracking in point-of-care settings. Grant funding will keep pushing designers to innovate, balancing legacy reliability with greener, smarter chemistry. Researchers weighing old habits against new risks and opportunities sit in the driver’s seat, setting a new bar for how biochemical tools shape the next chapter of molecular biology.




What is the primary use of N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide?

A Tool for Measuring Enzyme Activity

Anyone who’s spent time in a biochemistry lab knows certain compounds play quiet but vital roles. N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide lands squarely in that category. Researchers pick up this substrate when they’re tracking how enzymes like chymotrypsin and related proteases behave. Labs don’t throw this compound around just to see what sticks. Its main claim to fame: it lets scientists watch how fast and how much these enzymes break down proteins, which gives real insight into what’s happening inside bodies—or in industry applications.

Speaking from experience, watching that yellow color form in the cuvette tells everyone in the room: “the enzyme’s working.” The “p-nitroanilide” bit isn’t just a fancy chemical tail; it’s what lets researchers measure the enzymatic reaction. As the target enzyme breaks the bond, p-nitroanilide releases and turns yellow, and that color shift registers on spectrophotometers around 410 nm. This makes the reaction easy to monitor, reliable, and pretty hard to mess up if you follow the steps.

Why Scientists Use This Substrate

This substrate doesn’t show up in most homes, but you’ll find it wherever someone’s trying to measure protease activity. Researchers in medicine use it to check how well someone’s enzymes function. Drug companies monitor enzyme inhibition with it, since so many diseases tie back to enzymes going haywire. Even in agriculture and food science, knowing how fast and completely proteins break down shapes everything from bread texture to allergy research.

Enzyme assays powered by this substrate bring speed and clarity. Traditional protein digestion tests can drag on, need lots of sample, and sometimes end with fuzzy results. Here’s the difference: when labs use synthetic substrates like N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide, they can run small-scale, high-throughput tests. This means quicker answers for both academic projects and real-world diagnostics. A medical technologist told me once that switching to colorimetric assays cut their turnaround time for enzyme panels in half, freeing staff up for more complex testing.

Potential Risks and Challenges

Nothing in a lab exists without downsides. N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide’s chemical structure needs respect—direct contact or inhalation over time carries hazards, and disposal isn’t something to do down the drain. Labs must follow safety protocols, store it away from heat and light, and train newcomers on safe handling. Shortcuts can mean inaccurate readings or worse, a spill that nobody wants to explain to the safety officer.

There’s also a scientific limitation. Using a small synthetic peptide for enzyme measurement doesn’t always tell the whole story about how these enzymes act in living tissue. In my own research, we saw that enzymes sometimes recognize this artificial peptide more easily than their natural protein targets. That leads to readings that look great, but may not match how things actually work in cells. Good labs (and journals) encourage pairing these assays with natural-substrate tests for a full picture.

How Science Moves Forward

Lab chemistry advances by building better tools for measurement. Formulating alternatives or improved assays that mimic real biological situations more closely remains a work in progress. Funding targeted toward safer and more accurate enzyme assays could pay off for everything from drug development to food processing.

At its core, N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide stands out because it gives fast, clear results when studying enzymes that cut up proteins. Care, accuracy, and a healthy respect for the limits of in-vitro testing keep this compound as a laboratory standard. Knowing the why behind its use makes for better science, better safety, and sharper understanding in biochemistry.

What is the recommended storage condition for this product?

Understanding Real-World Storage Needs

Every product on a shelf comes with a story. Maybe something sat in the back of your fridge, or in the garage, and seemed fine—until it wasn't. Storage isn't just a formality—it's the difference between something lasting and something spoiling, sometimes even turning unsafe. People often ignore the details on packaging, but every line has a reason.

Looking back, I remember storing flour by the oven as a rookie cook. It caked up and tasted stale before half the bag turned into pancakes. No one told me heat and light mess with pantry staples. Later, a friend in pharmacy explained how warmth or humidity speeds up deterioration in medicines. Little environmental shifts make a big mark on quality, flavor, and even safety.

Why Temperature and Humidity Drive the Guidelines

Heat can wreck texture, separate oils, or fuel bacteria and mold. If something runs best at a cool temperature, it probably lives its “best life” in the fridge or even the freezer. That’s not just a chef’s wisdom—science backs it up. Prescription medicines, for example, usually stay potent stored below 25°C (77°F); higher temperatures cut shelf life by breaking down chemical bonds. Even vitamins and supplements follow this rule.

Humidity is another sneaky culprit. High moisture turns powders clumpy, lets molds get going, and throws off the balance of dry goods. Shops with a proper back room run dehumidifiers, because things as simple as salt draw in water from the air and turn to sludge. Paper packaging soaks up moisture, cardboard grows soft and tears. That’s why dry goods like cereals and crackers stick around longer in airtight containers, away from sinks or windows.

Sunlight and Air: Simple Enemies, Simple Fixes

Light breaks down natural colors, bleaches labels, and even degrades sensitive compounds like vitamins A and C. Most folks remember milk in clear bottles fading fast, turning off-smelling faster than the "sell by" date predicts. For this reason, manufacturers often call for storage in the “original packaging,” or an “opaque” container.

Air gets overlooked—until bags blow up, jars rust, or food goes stale. Oxygen reacts with fats to produce off-flavors: salad dressings separate, nuts turn bitter, crackers grow chewy. Screw-top lids and tight seals aren’t marketing gimmicks. They keep out what spoils a product from the inside out.

Simple Habits Keep Products Safe

Reading storage instructions isn’t overkill. Following “store in a cool, dry place” usually means picking a cabinet away from the stove, off the ground, and out of sunlight. Fridge storage demands tight wrapping, labeling by date, and regular checks on temperature with a thermometer—don’t trust just the dial.

Moving back to basics helps at home, in restaurants, and on a shop floor. Trusting professionals—chemists, food scientists, pharmacists—lifts the guesswork out of storage and keeps people safe from side effects, taste loss, or dangerous spoilage. Simple respect for proven methods builds trust between brands, stores, and consumers.

Building Good Storage Habits

Organizing pantries, reading expiration dates, using airtight containers, and checking instructions become second nature. These habits protect health, your wallet, and even the environment—less waste from spoilage means fewer resources tossed to the curb.

Effort in product storage pays off—the same way good ingredients bring out the best in any recipe. A cool, dry, dark place isn’t just a suggestion for storage; it’s a proven pathway to quality. Follow it, and you get the most from every package.

How is N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide used in enzymatic assays?

What’s the Big Deal with This Substrate?

Working in the lab, you don’t waste time unless you know something works. N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide (let’s call it SAPNA) earned its keep. Folks in research owe a lot to substrates like SAPNA, mostly because they don’t just sit in a tube—enzymes chew them up, and you see results clear as day.

How SAPNA Hits Home in Enzyme Assays

SAPNA doesn’t make sense unless you know chymotrypsin. Chymotrypsin is an enzyme slicing up proteins at specific points. Scientists and biotech workers use SAPNA as a favorite in assays that track chymotrypsin’s cutting action. The chemistry isn’t fancy: Chymotrypsin clips a specific bond in SAPNA, releasing a yellow compound named p-nitroaniline. That yellow buzz means the reaction happened.

Let’s say you're scouting for enzyme inhibitors or testing batch quality in the lab. Toss in SAPNA, add your sample, and track the color change. The more yellow you see, the more enzyme activity you’ve got. You read that with a spectrophotometer—no second-guessing or reading between the lines.

Why SAPNA Beats the Guesswork

Many years in an academic setting taught me one thing: you pick substrates that scream out clear answers, not ones mumbling in the background. SAPNA rewards you with a straightforward route. You don’t need complex detection tools; just measure how yellow things get at 405 nm. Need to figure out if something slows enzyme action? Watch the color drop off. Looking for higher activity? See a surge in the yellow.

Enzyme kinetics turn into a breeze. With SAPNA, you can nail down the Michaelis-Menten constants with confidence. Accurate readings lead to solid data, and that puts you ahead whether you're building a case for a new drug or confirming baseline health in a diagnostic kit.

The Trust Factor Backed by Research

SAPNA didn’t just happen to land in labs. Peer-reviewed studies in Journal of Biological Chemistry and Biochemistry showcase its reliability. Reproducibility stands high, and cross-checks back it up. When quality control teams in pharma or university researchers build entire enzyme panels, SAPNA holds its spot on the list.

The transparency in data matters too. The Environmental Protection Agency and FDA labs have referenced SAPNA-based assays in method documentation. Consistent results gain trust, and peer consensus does the rest.

Tackling the Glitches

No assay runs perfect all the time. With SAPNA, sometimes the background color noise creeps up, especially in crude samples. Filtering comes in handy—spin columns or quick protein purifications knock back the interference. Fresh substrate stocks matter. Faded yellow means expired p-nitroaniline in your drawer or light damage.

Some labs deal with tricky samples prone to high protein loads or odd pH. Buffer adjustments save the day; sticking to trusted recipes like Tris at neutral pH pays off. For teams aiming to expand the use of SAPNA, integrating automation brings consistency. Setting up plate readers for high-throughput work rounds out the system, keeping human error far from results.

Room for Real Impact

What I learned the hard way—lab assays don’t have to be gray areas. SAPNA steps up as a real-world tool, connecting chemistry to data that drives decisions. With solid technique, smart sample prep, and attention to detail, researchers harness the best SAPNA offers. Direct answers push science ahead, and SAPNA keeps that path wide open.

What is the molecular weight and formula of this compound?

Understanding the Basics

Behind every chemical compound sits a unique formula and a molecular weight that unlock its identity. Whether you recall high school chemistry or you’ve long left the labs behind, these pieces of information make a difference across plenty of areas, from healthcare to food production. Let's break things down: the formula tells which atoms make up the substance and in what proportion, and molecular weight shows how heavy a single molecule is, usually in units called grams per mole.

Real Impact on Healthcare and Nutrition

A simple painkiller like paracetamol, for example, has the formula C8H9NO2 and a molecular weight of about 151.2 g/mol. That single number guides pharmacists, doctors, and chemists in working out proper dosages and preparation methods. Calculating dosages for both adults and children comes down to those digits. Getting them wrong doesn’t just mean the medicine is less effective — it can be unsafe.

Food scientists use similar numbers to design new flavors or textures or to check for allergens. Gelatin, as another example, is a mixture of proteins and has an average molecular weight that can swing dramatically, depending on the process. This variation can change how the product holds up in desserts or nutritional supplements. It’s not just mathematics; it’s about making food safe and enjoyable.

Laboratories and Manufacturing Settings

Accuracy in the lab often starts with knowing both formula and molecular weight. Synthetic chemists rely on these details for each step in a reaction, right down to the milligram. Let’s say you’re working with glucose, with its formula C6H12O6 and molecular weight of 180.16 g/mol. Precision in measurement here directly affects how much product is created in the end.

Materials engineers face similar issues. Take the plastics industry, where tiny changes in polymer formulas or weight can mean the difference between a flexible film and a brittle sheet. The safety specs, the lifespan of consumer goods, even the price of manufacturing all tie back to these small details. Mistakes on paper often become expensive problems in the real world.

Education and Communication

Textbooks, software, and reference guides always give a chemical’s formula and weight right up front. These numbers don't just serve experts. They help students make their first sense of the world’s complexity. I remember chemistry class exercises: plug in the formula, work out a molar mass, and suddenly the invisible becomes a little less abstract. Those early steps led some of my classmates straight into careers in research or medicine.

Barriers and Solutions

Learning chemical formulas or calculating molecular weight can seem daunting, but tools have improved. Open-access databases, user-friendly apps, and interactive online calculators take much of the drudgery out of the process. Hands-on experience in the classroom speeds up learning and builds confidence. For professionals, up-to-date, searchable resources now make it faster to double-check formulas or molecular weights on the fly, cutting down on preventable mistakes.

Making high-quality, accessible reference materials and digital solutions can raise both safety and innovation. Supporting regular training in academic labs and industrial settings, emphasizing real-world examples instead of rote memorization, builds a stronger, safer, and more creative science-minded generation.

Are there any specific precautions or handling instructions for this product?

Getting to Know the Product

People buy products off the shelf every day, trusting that with a little common sense, they can use whatever they find in the bottle or box. Most folks scan the label, skip the fine print, and hope for the best. I’ve seen a lot of trouble over the years by ignoring the little things. Maybe it’s not your first thought, but a product might come with risks you don’t notice at a glance. Sometimes the error is as simple as leaving a cap loose, or storing something next to food on the wrong shelf in the fridge. Each small mistake adds up, especially when it involves substances with warnings on the packaging, even if the font’s tiny.

Why Safety Matters in the Real World

Once while moving boxes in a warehouse, I watched a co-worker prop a cleaning chemical on the highest shelf, then go back at the end of his shift and knock it over. The container hit the ground and leaked. Soon after, no one in the break room could stop coughing when the fumes drifted their way. A bad moment could’ve become much worse if we hadn’t acted fast. That story stuck with me. Most accidents around chemicals or specialized products don’t look like scenes from movies – just quick, unexpected events. Health effects might show up later, and they’re not always obvious. The CDC tracks thousands of cases every year where unsafe storage, lack of personal protection, or just using the wrong tool for the job leads to injury or illness.

Common Sense Practices Backed by Experience

Every product deserves a moment of attention before you start using it. Reading the label beats relying on guesswork. Certifications don’t replace smart handling. A spray cleaner with bleach, or a powder fertilizer, might call for gloves, eye protection, or at least a well-ventilated space. Simple directions like “keep out of reach of children” have a real reason behind them. Hospitals see ER visits from toddlers who got into a bottle left on the coffee table.

Storing things right goes a long way. Keep products in their original containers. Mixing leftovers from one into another just to save space can create reactions no expert could stop in time. Store away from food, sunlight, and high heat. If you find yourself coughing or rubbing your eyes during use, sometimes the right choice is to walk away for a minute until the air clears.

Smart Disposal and Long-Term Thinking

Once finished with a product, toss it the right way. Dumping chemicals down the drain threatens drinking water. Local hazardous waste facilities help dispose of paint, batteries, or cleaners safely – not every trash bin at the curb can handle it. I learned about community collection days after a neighbor’s garage filled with old pesticide bottles nobody wanted to touch. Those community events save more than space in the garage; they lower fire risk and keep chemicals out of the soil and water.

Simple Steps Go Far

Using and storing products with care shields people and the planet. Asking questions or checking with the manufacturer’s helpline can clear up confusion. Family, pets, and neighbors all benefit when each person pays attention to the small print—and those lessons last longer than any product on the shelf.

N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide
Names
Preferred IUPAC name (2S)-6-amino-2-[[(2S)-1-[(2S)-2-[[(2S)-1-[(4-nitroanilino)carbonyl]pyrrolidine-2-carbonyl]amino]propanoyl]pyrrolidine-2-carbonyl]amino]hexanedioic acid
Other names N-Succinyl-AAPF-pNA
Succinyl-Ala-Ala-Pro-Phe-pNA
Suc-AAPF-pNA
N-Succinyl-alanyl-alanyl-prolyl-phenylalanyl-4-nitroanilide
Pronunciation /ɛn səkˈsɪnɪl ˈæl.ə ˈæl.ə proʊ fiː pæra ˌnɪtroʊˈæn.ɪ.laɪd/
Identifiers
CAS Number 73813-06-4
Beilstein Reference 3560782
ChEBI CHEBI:61370
ChEMBL CHEMBL2105935
ChemSpider 180482
DrugBank DB07760
ECHA InfoCard ECHA InfoCard: 100.127.429
EC Number 3.4.21.62
Gmelin Reference 88258
KEGG C02199
MeSH D010374
PubChem CID 71265390
RTECS number AJ6950000
UNII MBM8FUM921
UN number UN3272
CompTox Dashboard (EPA) DTXSID60340687
Properties
Chemical formula C30H38N6O10
Molar mass 799.79 g/mol
Appearance Yellow powder
Odor Odorless
Density 1.23 g/cm³
Solubility in water Soluble in water
log P -2.7
Acidity (pKa) 7.6
Basicity (pKb) 8.52
Magnetic susceptibility (χ) Magnetic susceptibility (χ) of N-Succinyl-Ala-Ala-Pro-Phe-p-Nitroanilide: -6.13×10⁻⁶ cm³/mol
Dipole moment 7.83 D
Thermochemistry
Std molar entropy (S⦵298) 833.5 J·mol⁻¹·K⁻¹
Pharmacology
ATC code V04CM08
Hazards
Main hazards Harmful if swallowed. Causes serious eye irritation. Causes skin irritation. May cause respiratory irritation.
GHS labelling GHS07, GHS06
Pictograms CC(C[C@@H](C(=O)N[C@@H](CC(=O)N[C@@H](CC1=CC=C(C=C1)[N+](=O)[O-])C(=O)N)C(=O)N)N)C(=O)O
Signal word Warning
Hazard statements Hazard statements: H302-H315-H319-H335
Precautionary statements P264, P280, P305+P351+P338, P337+P313
NIOSH 8021977
REL (Recommended) 50 mg
Related compounds
Related compounds N-Succinyl-Ala-Ala-Pro-Phe
N-Succinyl-Ala-Ala-Pro-Phe-para-nitroanilide
Succinyl-Ala-Ala-Pro-Phe-p-nitroanilide
N-Acetyl-Ala-Ala-Pro-Phe-p-nitroanilide
Ala-Ala-Pro-Phe-p-nitroanilide
N-Succinyl-Ala-Ala-Pro-Leu-p-nitroanilide